FastQCFastQC Report
Sun 21 May 2023
EGAF00007943456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501781
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35350.7044906044668889No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24720.49264519780541705No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18780.3742668614395523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17120.34118470009825No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13390.2668494821446009No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11620.23157512938911598No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10970.21862127103258194No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10530.20985250537585123No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7560.15066333719291883No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7490.1492683062929844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7360.14667753462167757No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7230.1440867629503708No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA6520.1299371638224644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6340.12634994150834727No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5420.10801524968063758No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5050.10064151492384127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)