FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487869
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49211.008672410011704No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33770.6921940110972412No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16410.3363607853747625No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15740.32262759060321516No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13000.2664649731792756No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11230.23018474221563578No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10640.21809133189442248No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9650.1977989993215392No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7840.16069887613273237No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7190.1473756274737686No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7180.14717065441747684No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6760.1385617860532233No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA6380.13077280991413678No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.116629669030006No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4920.10084674369554122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)