FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431459
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11690.27094115547479597No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9840.22806338493344674No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9080.2104487332515952No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8040.1863444730553772No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7360.17058399523477316No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6630.15366465875088942No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6110.14161252865278046No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6060.14045366998950073No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5960.13813595266294132No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5660.13118280068326307No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5400.12515673563420857No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5280.12237547484233728No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4950.11472700766469121No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4880.1131046055360996No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4840.11217751860547584No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4800.11125043167485207No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4550.10545613835845354No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4440.10290664929923816No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4430.10267487756658222No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4420.10244310583392628No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4390.10174779063595846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)