FastQCFastQC Report
Sun 21 May 2023
EGAF00007943460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431459
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45481.0540978401192234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11580.2683916664155806No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9860.22852692839875866No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9810.2273680697354789No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9060.2099851897862833No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7980.1849538426594416No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7820.1812454949369465No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7430.17220639736336477No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6700.15528706087948102No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6190.143466702514028No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6130.14207607211809234No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6090.14114898518746857No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6020.13952658305887697No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5440.12608382256483233No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5390.12492496390155265No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5330.12353433350561699No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5320.12330256177296105No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5090.11797181192187438No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5060.11727649672390655No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4590.1063832252890773No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4550.10545613835845354No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4480.10383373622986193No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4470.10360196449720599No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4470.10360196449720599No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4450.1031384210318941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)