FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441440
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7920.17941283073577383No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7570.17148423341790503No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7210.16332910474809714No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5280.11960855382384922No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5050.11439833272924972No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4840.10964117433852846No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4720.10692279811525915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)