FastQCFastQC Report
Wed 31 May 2023
EGAF00007943462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441440
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21670.4908934396520478No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8990.20365168539325842No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8560.19391083725987676No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8170.18507611453425155No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7640.1730699528814788No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6390.14475353388909026No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5460.12368611815875317No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.11485139543312795No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4790.10850851757883291No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4540.1028452337803552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)