FastQCFastQC Report
Sun 21 May 2023
EGAF00007943464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447370
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37010.8272794331314125No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30550.6828799427766725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22850.5107629031897535No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21260.4752218521581688No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18450.41241030914008536No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17550.3922927330844715No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14750.3297047186892282No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13820.3089165567650938No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13650.30511657017681115No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13360.29863424011444667No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11850.2648814180655833No Hit
GTTCCGGAACAGTGGATGTTCCAGGGTGCAC10220.2284462525426381No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8650.19335225875673379No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8520.19044638665981178No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8470.18932874354561102No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7910.17681114066656234No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7160.16004649395355075No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6860.15334063526834613No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6820.1524465207769855No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6700.14976417730290364No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.14954064868006348No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5860.13098777298433065No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5820.13009365849297003No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5210.1164584124997206No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4560.10192905201511053No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC4480.1001408230323893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)