FastQCFastQC Report
Sun 21 May 2023
EGAF00007943465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448479
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19630.4377016538121071No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18680.41651894514570353No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16740.37326162429010057No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14880.3317881104800894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13780.30726076360320104No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12810.2856321031753995No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12320.27470628502114924No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11690.2606588045371132No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11650.25976690101431726No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11530.2570911904459295No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11090.24728025169517415No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8450.18841461919064215No Hit
GAACGCAGCCTGAGACAGATGGTACTGGTTAACGGCCGGGCTTA8330.18573890862225434No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8130.18127939100827464No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7840.17481309046800408No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7790.17369821106450917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7760.1730292834224122No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7180.16009668234187108No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6900.15385335768229952No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6490.14471134657364113No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6470.14426539481224315No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6220.13869099779476854No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5860.1306638660896051No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5130.1143866267985792No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5080.11327174739508426No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4900.10925818154250255No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4890.10903520566180357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)