FastQCFastQC Report
Sun 21 May 2023
EGAF00007943466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448479
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38620.8611328512594792No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31710.7070565176964807No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22290.4970132380780371No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21660.482965757594001No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17850.3980119470476879No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17120.38173470775666196No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14410.32130824408723707No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13510.30124041482432845No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13490.30079446306293045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13300.29655792132964975No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11910.2655642739124909No Hit
GTTCCGGAACAGTGGATGTTCCAGGGTGCAC9660.2153947007552193No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8710.19421199208881576No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8500.18952949859413706No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8430.18796866742924417No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8030.1790496322012848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7230.161211561745366No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7010.15630609236998833No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6660.14850193654552388No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6460.14404241893154418No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6290.14025182895966146No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6240.1391369495561665No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5390.1201839996967528No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5200.11594745796347208No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4990.11126496446879341No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4560.10167700159873706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)