FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434871
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20750.4771529947961579No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15940.36654548130365094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13880.31917511169979146No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13770.3166456259442455No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9930.2283435777506433No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9920.2281136245001391No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9360.21523624247190548No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8440.19408054342552158No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7910.18189302114880046No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7430.17085526512460017No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7060.16234699485594578No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.15866774284787902No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.14992951932872048No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6340.14579036081964536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6050.13912171655502437No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.1363622775489743No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4880.11221718624603617No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4810.11060751349250698No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4580.105318588730911No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4410.10140938347234006No Hit

[OK]Adapter Content

Adapter graph