FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442146
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38450.8696222514734953No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22130.5005134050743419No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16060.3632284358560295No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11400.2578333853523497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10300.23295472536221068No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7900.17867401265645283No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7230.16352064702609545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6830.15447386157513582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6740.1524383348486699No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6400.1447485672153542No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6110.13818964776340847No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6060.1370587995820385No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.13683262994576453No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5820.13163072831146272No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5470.12371479104187305No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5440.12303628213305108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5380.12167926431540713No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5190.1173820412262013No Hit
CCGCTGATTCGTCACGAAAACCGTATGGTTC5040.11398949668209143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)