FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446720
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT25470.5701558022922636No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20950.46897385386819485No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18110.4053993553008596No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15120.33846704871060174No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT12410.2778026504297994No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10830.24243373925501432No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10070.22542084527220632No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9870.22094376790830947No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8590.19229047277936961No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8130.1819931948424069No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7990.17885924068767908No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA7860.17594914040114615No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6760.15132521489971346No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6490.1452811604584527No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5940.13296919770773638No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5880.13162607449856734No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5600.12535816618911175No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5330.119314111747851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)