FastQCFastQC Report
Sun 21 May 2023
EGAF00007943478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446720
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42840.9589899713467048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35440.7933381088825214No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25370.5679172636103151No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21730.48643445558739257No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20190.4519609598853868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16700.3738359598853868No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG12540.2807127507163324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11560.2587750716332378No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10620.23773280802292263No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC8300.1857987106017192No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8150.18244090257879655No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6970.15602614613180515No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5870.1314022206303725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5830.1305068051575931No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5830.1305068051575931No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5700.12759670487106017No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5090.11394161891117478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)