FastQCFastQC Report
Sun 21 May 2023
EGAF00007943480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512423
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT77131.5052017571420486No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG28480.5557908212550959No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG17120.3340989768218835No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16770.32726868231909967No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14460.28218873860072635No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12890.25154998897395314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12610.24608575337172608No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12060.23535243343878004No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11100.21661791137400155No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9720.18968703590588246No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9460.1846131028466716No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9260.1807100774165094No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9080.17719735452936342No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC8990.17544099308579045No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8110.15826768119307683No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7800.15221799177632542No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7750.15124223541878487No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7420.14480224345901727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.13231256208249825No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6290.12275014977860088No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.11396834256073596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.10421077898533047No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5300.10343017389929804No Hit

[OK]Adapter Content

Adapter graph