FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524949
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17900.3409855052586061No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13940.2655496057712273No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11990.2284031401145635No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10240.1950665683714037No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9480.18058897150008857No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8660.16496840645472227No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8330.1586820814974407No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8150.15525317697528712No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8100.15430070349691113No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7910.15068130427908236No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7560.1440139899304504No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6880.13106035062453686No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6440.1226785840148281No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6190.11791621662294814No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6160.11734473253592255No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5700.10858197653486339No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5670.1080104924478378No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5310.10115268340353063No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5300.10096218870785544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)