FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524949
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44140.840843586710328No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17650.3362231378667261No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15190.28936144273062714No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14590.27793176099011524No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14510.27640780342471366No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9940.18935172750114773No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9920.18897073810979734No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9430.17963649802171258No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9420.17944600332603738No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9190.17506462532550782No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8790.16744483749849987No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8160.15544367167096232No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8160.15544367167096232No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7730.14725239975692878No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6930.13201282410291285No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6870.13086985592886166No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6740.12839342488508407No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6360.12115462644942653No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5680.10820098714351299No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5460.10401010383865861No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5400.10286713566460741No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5270.10039070462082983No Hit

[OK]Adapter Content

Adapter graph