FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508233
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14320.2817605310949899No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG10500.20659815478333757No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7640.15032475262330466No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7580.14914419173882845No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6820.13419042053546307No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5630.11077596299335146No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG5100.10034767518047824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)