FastQCFastQC Report
Wed 31 May 2023
EGAF00007943489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513067
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14990.2921645710989013No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11330.22082885860910956No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10650.20757522896619737No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10090.1966604751426227No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9950.19393178668672903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9830.19159291086739158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9100.17736474963308888No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8260.1609926188977268No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7970.15534033566766134No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7540.1469593639817022No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7290.1420867060247492No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6970.13584970383984937No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5670.11051188246369381No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5580.10875772559919075No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5470.10661375609813144No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA5450.1062239434615752No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5220.10174109814117843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)