FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513067
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21300.41515045793239475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19220.37460994373054596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13720.26741146867758014No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12230.23837042725414032No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11670.22745567343056558No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11350.22121867124566574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.20055860150818508No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10020.19529613091467585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9970.19432159932328527No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8400.16372130735362048No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8030.15650977357733004No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7500.14617973870858972No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7370.14364595657097415No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5870.11441000882925621No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5500.1071984750529658No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5460.1064188497798533No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5400.1052494118701846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)