FastQCFastQC Report
Sun 21 May 2023
EGAF00007943499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492537
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19860.40321843841173355No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18000.3654547780166769No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13320.27043653573234094No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13110.2661728966554797No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10400.21115164952074666No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10330.20973043649512627No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8760.17785465863478278No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8080.16404858924304164No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7820.15876979800502297No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7600.15430312849593025No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7380.14983645898683753No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7340.1490243372579116No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7330.1488213068256801No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6830.13866978521410575No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6310.12811220273806842No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6120.12425462452567014No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6000.1218182593388923No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5980.12141219847442933No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5880.11938189415211446No Hit
GGAACACACGTGCAGGCCATAAGAGCACAGGTCTTTGTTGTCAT5310.10780915951491968No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5260.10679400735376225No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5220.10598188562483632No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4980.10110915525128061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)