FastQCFastQC Report
Wed 31 May 2023
EGAF00007943500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492537
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41990.8525247849400147No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41760.8478550849986906No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17460.3544911346761766No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13430.2726698704868873No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11450.23246984490505282No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11250.22840923626042306No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9240.18760011938189416No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8290.16831222831990286No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8130.16506374140419908No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8080.16404858924304164No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7870.1597849501661804No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7280.14780615466452265No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7240.1469940329355967No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7200.14618191120667076No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6560.1331879635438556No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5790.11755462026203106No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5760.11694552896533662No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5750.11674249853310514No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5720.11613340723641066No Hit
GAAGACGGTGATATCATCCTGTACAAAAGCG5600.11369704204963282No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5600.11369704204963282No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5160.1047637030314474No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5110.10374855087028996No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5070.102936429141364No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4990.1013121856835121No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4960.10070309438681764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)