FastQCFastQC Report
Sun 21 May 2023
EGAF00007943501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526660
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16730.31766224888922645No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14590.2770288231496601No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9910.18816693882201038No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGCTGG6730.1277864276762997No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6610.12550791782174459No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5990.11373561690654312No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5440.10329244673983216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)