FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511295
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16850.32955534476183024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14210.27792174771902717No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10230.20008018854086193No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGCTGG6510.12732375634418486No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6140.12008722948591323No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5690.11128604817179906No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5540.10835232106709435No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5440.1063965029972912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)