FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544237
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT20100.3693243936005821No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19150.351868763057271No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16930.31107771062974404No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12550.2305980666511097No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT11920.21902222744870342No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG10900.2002803925495694No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10140.18631588811492053No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG8330.15305831834292782No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT7070.12990663993811521No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG6960.12788546166467918No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6800.12494556599422678No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6140.11281849635361066No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5540.10179388758941417No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5530.10161014411001089No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5520.10142640063060762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)