FastQCFastQC Report
Wed 31 May 2023
EGAF00007943506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544237
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19540.3590347587539987No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT18740.3443352804017367No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT17610.3235722672291667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14650.2691841973257974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12880.2366616014714178No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA12070.22177837963975253No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11830.21736853613407392No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11210.20597644041107094No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10220.18778583595014672No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10010.18392722288267793No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7500.137807609552456No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7330.13468397040260033No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6910.1269667442676628No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6590.12108695292675802No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5970.10969485720375499No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5710.10491752673926984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)