FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555229
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT20920.3767814721493294No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18530.33373617012079704No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT18380.33103458212737447No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13220.2380999551536393No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT12170.21918883919968155No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG11010.19829655871721397No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9730.17524300784000837No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG8270.1489475513706957No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT7900.14228363432025345No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG7750.1395820463268309No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6580.11850965997813515No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6460.1163483895833971No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5890.10608235520839149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)