FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555229
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT19580.35264728607475476No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT18650.33589744051553505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18580.33463669945193786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15110.2721399638707632No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13410.2415219666119745No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA12040.21684746293871537No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11880.21396576907906467No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11610.2091029106909041No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10080.18154671315799428No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9850.1774042782347464No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA7880.1419234225877971No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7860.1415632108553408No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7310.13165738821279147No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6870.12373273009875203No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5980.107703308004445No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5600.10085928508777459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)