FastQCFastQC Report
Sun 21 May 2023
EGAF00007943509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518744
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16000.3084373024073531No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12110.23344848325956544No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11860.2286291504094505No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10420.20086979319278875No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9490.18294187499036133No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8540.16462841015992474No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8400.1619295837638604No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7600.14650771864349274No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7450.1436161189334238No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7320.14111006585136407No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6920.13339913329118025No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6730.12973644032509293No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6280.12106164119488612No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6130.11817004148481718No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5660.10910969572660119No Hit
CACGTCCTTCATGAAGTTGTCGTTATAGTTCATTGCTTCTTCGG5640.10872414909859197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)