FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518744
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26560.5120059219962062No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15820.3049673827552704No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14170.2731597859445121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13560.2614006137902318No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10920.2105084588930185No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10530.20299029964683926No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9240.17812254214024645No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9130.1760020356861959No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7760.14959209166756626No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7630.14708603858550653No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7420.14303779899141No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6910.13320635997717564No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6890.13282081334916646No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6750.13012198695310212No Hit
GATTCCAAAGCCAATGCGTTCAACGCAGCTA5950.11470012183273444No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5650.10891692241259657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)