FastQCFastQC Report
Sun 21 May 2023
EGAF00007943516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452918
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23200.5122340026229913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18200.4018387434370018No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10900.24066166502545713No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10240.22608949081290652No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9860.21769945111477135No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9760.21549154593105152No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8110.17906111039967498No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7640.16868395603619196No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7150.157865220635965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7050.15565731545224523No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7000.15455336286038532No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5920.1307079868762116No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5900.13026640583946764No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5440.12011004199435658No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4830.10664182037366587No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4730.10443391518994609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)