FastQCFastQC Report
Wed 31 May 2023
EGAF00007943519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400163
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT14650.36610081391832827No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8960.2239087571814486No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6250.15618635406072026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5600.13994297323840535No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5260.13144643557750216No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA4780.11945132358563885No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4700.11745213825366163No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4260.10645661892778693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)