FastQCFastQC Report
Sun 21 May 2023
EGAF00007943521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471213
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15140.3212984361636882No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14510.3079286861780129No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10170.21582596405447219No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT10160.21561374580073128No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9990.2120060354871364No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9840.20882276168102323No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9350.19842406724772024No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9070.19248195614297567No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9040.19184530138175304No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8330.17677780536615076No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7500.15916369030565797No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7050.14961386888731848No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6640.1409129204839425No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6640.1409129204839425No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6430.1364563371553841No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6300.13369749985675267No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT6050.12839204351323075No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6000.12733095224452634No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5990.1271187339907855No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5990.1271187339907855No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5880.12478433319963583No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5830.12372324193093145No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5810.12329880542344969No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5480.11629560305000074No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5460.115871166542519No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5090.10801909115410653No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4950.10504803560173424No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4910.10419916258677074No Hit
TGCGGTTTTGCGTTCGGTTTCGGCTTTCTGTTTGACTGCCAGCT4830.10250141655684374No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4760.10101588878065758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)