FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471213
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51001.082313094078474No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38030.8070660189765563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14360.3047454123718997No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11050.23450117038366938No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10950.23237898784626063No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG10550.22389025769662552No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10530.22346582118914377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9710.20606392438239185No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9590.20351730533750131No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9150.1941797021729027No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9110.19333082915793917No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9000.19099642836678954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8260.17529227758996463No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7220.1532215792009134No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7180.15237270618594986No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA7010.14876499587235498No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6870.1457939403199827No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6860.14558172206624181No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6710.14239844826012865No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6560.1392151744540155No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6560.1392151744540155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6540.13879073794653374No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6240.1324241903343074No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6240.1324241903343074No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6050.12839204351323075No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.12605764272208111No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5890.12499655145337672No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5660.12011553161733653No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5590.1186300038411504No Hit
GCAGCTGAACTGGCTCACCGTCAAGAAGCTG5580.11841778558740951No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5490.11650782130374163No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5440.11544673003503723No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5320.1129001109901467No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5000.10610912687043864No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4990.10589690861669775No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT4750.1008036705269167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)