FastQCFastQC Report
Wed 31 May 2023
EGAF00007943524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485071
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25690.5296131906463177No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21800.44941874488476946No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12050.2484172420119941No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11130.2294509463563066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10640.21934933236577736No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9170.18904449039418972No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8500.1752320794275477No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8340.1719335932265586No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8170.16842895163800764No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7960.1640996884992094No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6770.13956719737935272No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5860.12080705711122702No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5850.12060090172366518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)