FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424350
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44551.0498409331919405No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41250.9720749381406858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22640.5335218569577No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20940.49346058677978083No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13970.3292093790503122No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8970.21138211382113822No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6680.1574172263461765No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5910.1392718275008837No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5810.13691528219630023No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5540.13055260987392484No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5240.12348297396017438No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5220.1230116648992577No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4920.11594202898550725No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4830.11382113821138211No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4480.10557322964533994No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4350.1025097207493814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)