FastQCFastQC Report
Sun 21 May 2023
EGAF00007943527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437764
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14300.32666002686378964No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10750.2455661041108908No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10530.24054056523606326No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9590.21906780822543653No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8790.20079312140788186No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8770.200336254237443No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8580.1959960161182738No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7880.18000566515291344No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7650.17475169269286647No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7520.17178205608501385No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7500.17132518891457496No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7330.16744181796584462No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7260.1658427828693086No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6880.1571623066309701No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6840.15624857229009237No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6530.14916713114828994No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6250.1427709907621458No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5830.1331767801829296No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5660.12929340923419924No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5610.12815124130810207No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5470.12495317111503003No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5430.12403943677415229No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5320.1215266673367385No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5190.11855703072888588No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4890.1117040231723029No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4830.1103334216609863No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4800.109648120905328No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4560.10416571486006158No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4460.10188137900786726No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4410.10073921108177009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)