FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437764
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22200.507122559187142No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19320.4413336866439452No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14850.33922387405085846No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14370.32825906196032567No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA10880.24853574071874346No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10580.2416827331621604No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9870.22546394861158064No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9350.21358540218017014No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9180.20970203123143977No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8190.1870871062947159No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8090.18480277044252152No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7760.17726446213028024No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7690.17566542703374421No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7640.17452325910764704No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7410.16926928664760008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7410.16926928664760008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7250.16561434928408914No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6910.1578476073866284No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6570.1500808654891677No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6220.14208569000648752No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6130.1400297877395126No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.1324914794272713No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5790.13226304584205187No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5650.1290649756489798No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.12746594055244378No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5230.11947076506976362No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5170.11810016355844702No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5160.11787172997322758No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5130.11718642921756928No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5020.11467365978015552No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4820.11010498807576687No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4610.10530788278615875No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4540.10370884768962271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)