FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438900
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25160.5732513100934153No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21030.4791524265208476No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20770.4732285258601048No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16980.3868762816131237No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13720.31259968102073366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12930.29460013670539986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11220.2556390977443609No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9710.22123490544543176No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9150.20847573479152426No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9120.2077922077922078No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7800.177717019822283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7360.1676919571656414No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6980.15903394850763272No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6790.1547049441786284No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6780.1544771018455229No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6200.14126224652540442No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5590.12736386420596946No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5590.12736386420596946No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5570.1269081795397585No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4860.11073137388926864No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4840.11027568922305764No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4760.10845295055821372No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4550.1036682615629984No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4480.10207336523125998No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4460.10161768056504898No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4440.10116199589883801No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4430.10093415356573252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)