FastQCFastQC Report
Wed 31 May 2023
EGAF00007943536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464599
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48141.0361623679775462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17500.37666891233084876No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12060.25957869044057347No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11840.2548434241141285No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11370.2447271733258143No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10390.2236337142352868No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8520.18338395046050465No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8460.18209251418965602No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7960.17133054526591748No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7000.15066756493233951No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6620.14248846855029823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6530.14055131414402527No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6220.13387889341130738No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4940.10632825296653674No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4880.10503681669568811No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4860.10460633793873857No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4680.10073202912619271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)