FastQCFastQC Report
Sun 21 May 2023
EGAF00007943538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457540
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCAACATGGACATCGATGGTATTAACA22480.4913231630021419No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21990.48061371683350096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15920.34794772041788696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8710.19036586965074093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8380.18315338549635005No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7880.17222537920181843No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7110.15539624950823971No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7060.15430344887878655No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.11736678760326967No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4920.1075315819381912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)