FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446392
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10360.23208301224036273No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7900.17697449775085575No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7650.1713740389612717No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7460.16711769028118784No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7170.16062115808527033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6770.15166042402193586No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6490.14538791017760175No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6370.1426996899586014No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6250.14001146973960107No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5480.12276205666768222No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4860.1088729188695138No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4470.10013620315776268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)