FastQCFastQC Report
Wed 31 May 2023
EGAF00007943540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446392
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11470.25694904926611584No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9200.20609688345669275No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8450.18929550708794066No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8410.1883994336816072No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8340.18683130522052366No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7870.17630244269610565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7860.1760784243445223No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7790.17451029588343878No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.16980591050018817No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7090.15882901127260346No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6740.1509883689671858No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6660.1491962221545189No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6560.14695603863868528No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6500.14561192852918511No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5810.13015466226993316No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4570.1023763866735963No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4570.1023763866735963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)