FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451167
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41790.9262645539234917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34790.7711113623115166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15880.35197609754259507No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15020.332914419715981No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11480.25445123424363925No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9820.21765776308994234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.20192079651215625No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8820.19549302143108874No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8820.19549302143108874No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8520.1888435989334326No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8320.1844106506016619No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8170.18108593935283387No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8160.18086429193624534No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7310.16202426152621976No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6500.14407082078254838No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6380.14141105178348592No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6370.1411894043668974No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6110.13542657153559548No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6060.1343183344526528No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5970.13232350770335596No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5410.11991125237439794No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.11348347729333041No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5070.11237524021038774No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5060.11215359279379919No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4680.10373099096343483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)