FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465552
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12070.259262123242946No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10730.23047908719111937No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9370.20126645358628037No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9120.19589648417362615No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6890.14799635701275046No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5330.11448774787778809No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5260.1129841564422449No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4990.10718458947657834No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4920.10568099804103516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)