FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465552
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37300.8011994363680105No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23680.5086435027666082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11430.24551500154655118No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10550.2266127092140083No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9420.20234044746881122No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9160.19675567927965082No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6600.14176719249407155No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5760.12372409526755336No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5130.11019177234766471No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4800.10310341272296113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)