FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473911
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28300.5971585382065409No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27350.5771125802102083No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25670.5416628860693252No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21840.4608460238314789No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21630.4564148120638685No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20600.4346807733941605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18040.3806621918461483No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17250.36399239519656645No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15850.3344509834124973No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14310.3019554304500212No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11730.24751482873366518No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10930.23063402199991137No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9490.20024856987915451No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8960.18906503541804262No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8910.18800998499718302No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8810.1858998841554638No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA8790.18547786398711996No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8350.17619342028355534No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7820.16500988582244344No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7490.15804655304477003No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC7230.15256029085630002No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7150.15087221018292465No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6460.13631251437506198No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6150.1297712017657324No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5910.12470695974560625No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5590.11795463705210472No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5540.11689958663124511No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5420.11436746562118205No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5240.11056928410608743No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5120.10803716309602436No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5090.1074041328435086No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4840.10212888073921052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)