FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448592
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38610.8606930128045084No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31460.7013054178407104No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11980.2670578164568249No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9660.21534044298605415No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9510.21199664728751294No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8990.20040482219923672No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7840.1747690551770874No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6820.15203124442700716No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6720.14980204729464636No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6500.14489781360345258No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5800.12929343367692692No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5380.11993080572101152No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5000.11145985661804045No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4980.11101401719156828No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4930.10989941862538787No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4510.10053679066947248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)