FastQCFastQC Report
Sun 21 May 2023
EGAF00007943550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470550
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16990.3610668366804803No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15790.33556476463712676No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10330.21953033683986822No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8090.17192646902560832No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7970.169376261821273No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7840.1666135373499097No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7730.1642758474126023No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6510.13834874083519286No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.13622356816491338No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6330.13452343002868983No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5840.12411008394432048No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5820.12368504941026458No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5760.12240994580809691No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5720.12155987673998511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)