FastQCFastQC Report
Sun 21 May 2023
EGAF00007943552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465963
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG43030.9234638801793276No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40010.8586518672083406No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35270.7569270521479173No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19490.41827355390878673No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18490.39681262246144006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16120.34595021493122846No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12980.2785628901865599No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11420.24508383712869905No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9690.2079564257247893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9030.1937922109695405No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8880.1905730712524385No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8250.1770526844406101No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG7780.16696604666035714No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT7660.16439073488667555No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT7490.16074237654062662No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6400.13734996126301874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5810.1246880117090842No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5530.11867895090382713No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA5290.11352832735646393No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC5060.10859231312357417No Hit

[OK]Adapter Content

Adapter graph