FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468400
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13180.2813834329632792No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11850.25298889837745514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11590.24743808710503842No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8420.1797608881298036No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7700.16438941076003416No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6880.14688300597779674No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6310.1347139197267293No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6250.1334329632792485No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5710.12190435525192143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.1082408198121264No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4700.10034158838599487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)